STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77217.1Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. (403 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; KEGG: ctc:CTC01741 3.5e-296 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.804
EFB74583.1
Hypothetical protein; KEGG: ctc:CTC01741 1.0e-113 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.804
EFB77198.1
DNA-binding helix-turn-helix protein; KEGG: eba:ebA2762 3.6e-07 boxR; putative regulator of aerobic benzoate metabolic operon containing shikimate kinase-like domain K00891; Psort location: Cytoplasmic, score: 8.96.
  
    0.635
EFB77192.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.511
EFB77216.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
 
    
0.490
EFB77179.1
CHC2 zinc finger domain protein; KEGG: ilo:IL2201 4.6e-10 dnaG; DNA primase K02316; Psort location: Cytoplasmic, score: 8.96.
  
     0.486
EFB77296.1
CHC2 zinc finger domain protein; KEGG: eca:ECA0681 5.3e-09 dnaG, dnaP, parB; DNA primase K02316; Psort location: Cytoplasmic, score: 8.96.
  
     0.448
EFB77001.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.435
EFB77218.1
Hypothetical protein.
       0.429
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.