STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77298.1Helicase C-terminal domain protein; KEGG: chu:CHU_1468 8.4e-07 dpn; possible adenine-specific DNA methylase K00599; Psort location: Extracellular, score: 9.72. (2992 aa)    
Predicted Functional Partners:
EFB77299.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.831
EFB77300.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.814
EFB77296.1
CHC2 zinc finger domain protein; KEGG: eca:ECA0681 5.3e-09 dnaG, dnaP, parB; DNA primase K02316; Psort location: Cytoplasmic, score: 8.96.
 
   
0.629
EFB77286.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.613
EFB77297.1
Hypothetical protein.
       0.574
EFB77295.1
Hypothetical protein.
       0.572
EFB77192.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.562
EFB77294.1
DNA topoisomerase; KEGG: efa:EF2312 6.7e-213 topB-2; DNA topoisomerase III K03169.
       0.559
EFB77290.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.556
EFB77291.1
Hypothetical protein.
       0.545
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.