STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77321.1KEGG: reh:H16_A1096 0.0017 rpoE3; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96. (141 aa)    
Predicted Functional Partners:
EFB76881.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 6.9e-06 dam; adenine-specific DNA methyltransferase K06223; Psort location: Cytoplasmic, score: 8.96.
  
     0.716
EFB76961.1
Hypothetical protein.
  
 
 0.645
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.640
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.619
EFB77192.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.613
EFB77197.1
Relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.597
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.550
EFB77179.1
CHC2 zinc finger domain protein; KEGG: ilo:IL2201 4.6e-10 dnaG; DNA primase K02316; Psort location: Cytoplasmic, score: 8.96.
  
     0.549
EFB77180.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.526
EFB77174.1
Hypothetical protein.
  
     0.476
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.