STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77325.1Efflux ABC transporter, permease protein; KEGG: bur:Bcep18194_B0724 0.0015 hypothetical protein K06020; Psort location: CytoplasmicMembrane, score: 10.00. (605 aa)    
Predicted Functional Partners:
EFB77324.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 4.5e-49 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.984
EFB77328.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 8.2e-50 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.934
EFB77323.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01818 5.4e-46 resE; sensor protein ResE; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
  0.912
EFB77322.1
Response regulator receiver domain protein; KEGG: ava:Ava_3369 1.3e-33 two component transcriptional regulator, winged helix family; Psort location: Cytoplasmic, score: 9.97.
 
     0.884
EFB77201.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 1.3e-51 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.821
EFB75980.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.791
EFB77326.1
Transglycosylase; KEGG: nme:NMB1807 5.1e-35 penicillin-binding protein 1A (penicillin-insensitive transglycosylase / penicillin-sensitive transpeptidase) K05366.
  
    0.771
EFB77556.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0988 8.1e-59 ATPase K02003; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.762
EFB74760.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 6.4e-50 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); Psort location: CytoplasmicMembrane, score: 9.82.
  
 0.736
EFB77143.1
KEGG: fal:FRAAL1681 5.5e-44 putative ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
 0.727
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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