STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76925.1DNA-binding helix-turn-helix protein; KEGG: tma:TM1082 2.9e-15 lexA repressor K01356. (209 aa)    
Predicted Functional Partners:
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.990
EFB77101.1
ImpB/MucB/SamB family protein; KEGG: btl:BALH_p0040 2.8e-33 uvrX; DNA-damage repair protein (DNA polymerase IV) K00961; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.750
dinB
ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
 
 0.750
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.653
EFB75791.1
Hypothetical protein; KEGG: btl:BALH_p0040 0.0010 uvrX; DNA-damage repair protein (DNA polymerase IV) K00961; overlaps another CDS with the same product name.
  
 
 0.640
EFB75792.1
Hypothetical protein; KEGG: nma:NMA1661 1.5e-06 DNA polymerase IV K02346; overlaps another CDS with the same product name.
  
 
 0.640
EFB76924.1
Putative DNA modification/repair radical SAM protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.547
EFB76923.1
Putative DNA metabolism protein; Psort location: Cytoplasmic, score: 8.96.
       0.540
EFB77447.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 7.4e-17 adaA; methylphosphotriester-DNA alkyltransferase (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.97.
  
 
   0.506
EFB76926.1
Hypothetical protein.
       0.491
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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