STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76994.1Hypothetical protein. (346 aa)    
Predicted Functional Partners:
EFB76993.1
Putative peptidoglycan binding domain protein; KEGG: bha:BH3665 1.2e-19 lytC; N-acetylmuramoyl-L-alanine amidase, major autolysin K01448.
   
 0.985
EFB76992.1
Putative peptidoglycan binding domain protein; KEGG: bcl:ABC2815 2.9e-07 N-acetylmuramoyl-L-alanine amidase K01446.
 
  
  0.847
EFB74419.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.659
EFB75080.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.516
fba
KEGG: cpr:CPR_1350 1.2e-112 fba; fructose-1,6-bisphosphate aldolase, class II K01624.
       0.506
spoVAD
Stage V sporulation protein AD.
  
   
 0.492
EFB75081.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.475
EFB76402.1
Putative stage V sporulation protein AC; Psort location: CytoplasmicMembrane, score: 9.46.
  
   
 0.467
EFB76991.1
Nitroreductase family protein; KEGG: sat:SYN_01293 8.0e-20 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase K00357.
       0.440
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
     0.439
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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