STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77075.1Virulence-associated protein E; Psort location: Cytoplasmic, score: 8.96. (458 aa)    
Predicted Functional Partners:
EFB77074.1
Hypothetical protein; KEGG: dde:Dde_2053 3.0e-05 DNA primase K02316.
 
     0.944
EFB76264.1
MobA/MobL family protein; KEGG: ret:RHE_PA00159 6.7e-29 traAa; conjugal transfer protein A K01144.
 
     0.672
EFB76263.1
CHC2 zinc finger domain protein; KEGG: dvu:DVU1789 2.2e-15 dnaG; DNA primase K02316; Psort location: Cytoplasmic, score: 8.96.
 
     0.605
tnpX
TnpX site-specific recombinase; Psort location: Cytoplasmic, score: 8.96.
  
     0.554
EFB76274.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.531
EFB77079.1
Hypothetical protein; KEGG: vfi:VFB02 0.0017 traC; DNA primase TraC; Psort location: Cytoplasmic, score: 8.96.
 
     0.478
EFB76271.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.451
EFB77063.1
Hypothetical protein.
  
     0.448
EFB77047.1
Hypothetical protein; KEGG: lac:LBA1588 0.00024 prtM; PrtM precursor K07533.
  
     0.403
EFB77073.1
Hypothetical protein.
       0.400
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.