STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaDPutative rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. (277 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase; KEGG: bha:BH1551 3.5e-113 rhamnulokinase K00848.
 
 0.995
EFB76829.1
Hypothetical protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.901
tpiA-2
KEGG: mag:amb1819 6.1e-22 triosephosphate isomerase K01803; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.866
EFB74502.1
Hypothetical protein.
    
  0.862
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.844
fba
KEGG: cpr:CPR_1350 1.2e-112 fba; fructose-1,6-bisphosphate aldolase, class II K01624.
  
 
 0.807
EFB75245.1
Ketose-bisphosphate aldolase; KEGG: cte:CT1053 1.6e-56 fbaA; fructose-bisphosphate aldolase, class II K01624; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.807
EFB74345.1
KEGG: sdy:SDY_4132 8.8e-53 putative aldolase K01624.
  
 
 0.807
EFB76827.1
Transcriptional regulator, AraC family; KEGG: bli:BL05281 6.1e-08 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.97.
 
     0.767
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.631
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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