STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76530.1Putative undecaprenol kinase; KEGG: bsu:BG11040 3.5e-19 dgkA, dgk, yqxF; diacylglycerol kinase K00901; Psort location: CytoplasmicMembrane, score: 10.00. (165 aa)    
Predicted Functional Partners:
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.959
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.883
cdsA
Phosphatidate cytidylyltransferase; KEGG: tte:TTE1403 5.0e-34 cdsA; CDP-diglyceride synthetase K00981; Psort location: CytoplasmicMembrane, score: 10.00.
    
 0.841
gpsA
KEGG: ldb:Ldb1959 6.2e-100 gpsA2; glycerol-3-phosphate dehydrogenase K00057; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.838
uppP
Putative undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
    
 0.837
EFB76576.1
Lipid kinase, YegS/Rv2252/BmrU family; KEGG: eci:UTI89_C2362 1.7e-09 hypothetical protein.
     
 0.835
EFB75571.1
Acyltransferase; KEGG: chu:CHU_2690 7.0e-21 plsC; 1-acylglycerol-3-phosphate O-acyltransferase (1-acyl-sn-glycerol-3-phosphate acyltransferase) K00655.
    
 0.828
mraY
Putative phospho-N-acetylmuramoyl-pentapeptide-transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
 
  0.819
EFB76528.1
PhoH family protein; KEGG: reh:H16_A0527 7.2e-74 phoH; phosphate starvation-inducible protein PhoH,predicted ATPase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.766
EFB76284.1
PAP2 family protein; KEGG: spk:MGAS9429_Spy1565 5.6e-19 phosphatidylglycerophosphatase B K01094; Psort location: CytoplasmicMembrane, score: 9.46.
    
 0.680
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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