STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76600.1Glucose/galactose-binding lipoprotein family protein; Psort location: Periplasmic, score: 9.44. (429 aa)    
Predicted Functional Partners:
EFB76602.1
KEGG: tde:TDE2216 1.7e-175 mglA; galactoside ABC transporter, ATP-binding protein K02056; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.957
EFB76603.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: eco:b4460 5.3e-32 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K02057; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.954
EFB74961.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.4e-60 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.774
EFB74818.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 3.7e-38 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.774
EFB74819.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_1710 3.8e-61 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.774
EFB74962.1
KEGG: atc:AGR_C_5112 1.2e-117 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 7.88.
  
 0.694
EFB74820.1
ABC transporter, ATP-binding protein; KEGG: sme:SMb21588 5.0e-137 putative sugar uptake ABC transporter ATP-binding protein K02056; Psort location: CytoplasmicMembrane, score: 7.88.
  
 0.694
EFB74377.1
KEGG: gka:GK1909 6.8e-110 araG; ABC transporter (ATP-binding protein) K02056; Psort location: CytoplasmicMembrane, score: 7.88.
  
 0.694
EFB74378.1
Hypothetical protein; KEGG: ret:RHE_CH03164 1.8e-16 gguA; xylose ABC transporter, ATP-binding protein K02056.
  
 0.694
EFB74340.1
ABC transporter, ATP-binding protein; KEGG: bha:BH3441 6.3e-75 putative simple sugar transport system ATP-binding protein K02056; Psort location: CytoplasmicMembrane, score: 9.82.
  
 0.694
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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