STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76611.1KEGG: cff:CFF8240_1111 1.2e-23 rrmJ; ribosomal RNA large subunit methyltransferase J K00599; Psort location: Cytoplasmic, score: 8.96. (273 aa)    
Predicted Functional Partners:
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
  
    0.904
nadK
NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
 0.901
EFB76614.1
KEGG: reu:Reut_A0881 3.4e-60 polyprenyl synthetase K00795; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
 
    0.888
argR
Arginine repressor, C-terminal domain protein; Regulates arginine biosynthesis genes.
  
    0.802
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
    0.764
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
    0.754
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
 
  
 0.745
EFB76552.1
KEGG: rno:60580 1.3e-28 Hint1; histidine triad nucleotide binding protein 1 K06069; Psort location: Cytoplasmic, score: 8.96.
      0.729
EFB76613.1
Divergent PAP2 family; Psort location: CytoplasmicMembrane, score: 9.46.
       0.723
EFB76617.1
Peptidase, M22 family; KEGG: mta:Moth_1520 6.0e-47 O-sialoglycoprotein endopeptidase K01409; Psort location: Extracellular, score: 9.71.
       0.711
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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