STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76632.1Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (339 aa)    
Predicted Functional Partners:
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.965
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.812
EFB76630.1
Transglycosylase SLT domain protein; KEGG: tte:TTE0876 8.7e-30 mltE; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) K01238; Psort location: Periplasmic, score: 9.44.
     
 0.809
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.797
EFB76629.1
Aminopeptidase I zinc metalloprotease (M18); KEGG: tte:TTE1680 4.9e-107 lap4; aspartyl aminopeptidase K01269; Psort location: Cytoplasmic, score: 8.96.
       0.752
EFB76634.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.745
EFB75946.1
Hypothetical protein.
 
      0.699
EFB74586.1
Putative phosphoglycolate phosphatase, bacterial; KEGG: bth:BT4184 2.1e-44 phosphoglycolate phosphatase K01091; Psort location: Cytoplasmic, score: 8.96.
 
    0.671
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; KEGG: gox:GOX0030 2.8e-40 HemK family protein K02493.
 
  
 0.620
EFB76635.1
S1 RNA binding domain protein; KEGG: cno:NT01CX_2096 2.0e-09 RpsA K03527; Psort location: Cytoplasmic, score: 8.96.
 
    0.541
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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