STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thrCThreonine synthase; KEGG: smu:SMU.70 9.3e-113 thrC; putative threonine synthase K01733. (482 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
 
 0.999
EFB75917.1
KEGG: mta:Moth_1307 9.3e-77 homoserine dehydrogenase K00003; Psort location: Cytoplasmic, score: 8.96.
 
 0.982
ilvA
KEGG: chy:CHY_2459 4.7e-102 ilvA2; threonine dehydratase K01754; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.973
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.
 
  
 0.946
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
   
 0.877
EFB76165.1
Beta-eliminating lyase; KEGG: cac:CAC3420 1.1e-95 low specificity L-threonine aldolase K01620; Psort location: Cytoplasmic, score: 8.96.
  
 0.860
EFB75254.1
GroES-like protein; KEGG: bsu:BG13207 1.0e-74 yjmD; similar to alcohol dehydrogenase K00100; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.815
EFB76824.1
Class II glutamine amidotransferase; KEGG: syn:sll1502 0. gltB; NADH-dependent glutamate synthase large subunit K00268.
  
  
 0.811
EFB76649.1
TIGR00252 family protein; KEGG: sat:SYN_00772 2.2e-17 endonuclease; Belongs to the UPF0102 family.
       0.749
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.749
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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