STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76773.1LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 1.4e-15 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
EFB74455.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 0.00010 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.26; Belongs to the LysR transcriptional regulatory family.
  
     0.692
EFB76772.1
PHP domain protein; KEGG: reh:H16_A1200 6.6e-12 predicted metal-dependent phosphoesterase (PHP family); Psort location: Cytoplasmic, score: 8.96.
  
    0.548
EFB76824.1
Class II glutamine amidotransferase; KEGG: syn:sll1502 0. gltB; NADH-dependent glutamate synthase large subunit K00268.
  
  
 0.540
EFB76771.1
Conserved hypothetical protein TIGR03905.
       0.495
EFB76774.1
CAAX amino terminal protease family protein; KEGG: sfx:S4574 8.1e-05 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.471
EFB76770.1
FkbH domain protein; Psort location: Cytoplasmic, score: 8.96.
       0.469
EFB76769.1
Hypothetical protein.
       0.452
EFB76768.1
MBOAT family protein; KEGG: hne:HNE_2072 1.7e-65 algI; alginate biosynthesis protein AlgI K00680; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the membrane-bound acyltransferase family.
  
    0.448
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.445
EFB76776.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: sth:STH968 1.7e-49 3-oxoacyl-(acyl-carrier protein) reductase K00059; Psort location: Cytoplasmic, score: 9.26.
       0.445
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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