STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76774.1CAAX amino terminal protease family protein; KEGG: sfx:S4574 8.1e-05 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247; Psort location: CytoplasmicMembrane, score: 10.00. (303 aa)    
Predicted Functional Partners:
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.792
EFB76776.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: sth:STH968 1.7e-49 3-oxoacyl-(acyl-carrier protein) reductase K00059; Psort location: Cytoplasmic, score: 9.26.
       0.757
EFB75549.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.601
EFB75647.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.574
EFB74904.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.549
EFB77335.1
Acyltransferase; KEGG: azo:azo2239 3.5e-05 gumF; putative acetyltransferase K00680; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.547
cobI
KEGG: mth:MTH1348 2.2e-24 precorrin-2 C20-methyltransferase K03394; Belongs to the precorrin methyltransferase family.
   
    0.543
cobH
KEGG: gme:Gmet_0477 8.1e-43 precorrin-8X methylmutase CbiC/CobH K01833.
   
    0.528
EFB76999.1
Hypothetical protein; KEGG: pat:Patl_2091 4.5e-08 copper-translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.518
EFB76086.1
SpoIID/LytB domain protein; KEGG: cal:orf19.575 0.00020 HYR5; similar to HYR1 K01186; Belongs to the CinA family.
 
    0.502
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.