STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadACytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (153 aa)    
Predicted Functional Partners:
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
 0.940
hisE
phosphoribosyl-ATP diphosphatase; KEGG: tte:TTE2132 6.5e-57 hisI; phosphoribosyl-AMP cyclohydrolase K01496:K01523; Psort location: Cytoplasmic, score: 9.26; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.935
xth
Exodeoxyribonuclease III; KEGG: cpr:CPR_1192 1.8e-84 xth; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.26.
   
 
 0.905
EFB75185.1
KEGG: ade:Adeh_2388 1.4e-29 biotin--acetyl-CoA-carboxylase ligase K01947.
 
    0.883
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.867
EFB76776.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: sth:STH968 1.7e-49 3-oxoacyl-(acyl-carrier protein) reductase K00059; Psort location: Cytoplasmic, score: 9.26.
 
  
 0.831
EFB76294.1
Alpha amylase, catalytic domain protein; KEGG: fal:FRAAL2309 3.8e-52 cyclomaltodextrinase K01208.
      0.818
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
 
 
 0.799
EFB76774.1
CAAX amino terminal protease family protein; KEGG: sfx:S4574 8.1e-05 frdD; fumarate reductase, anaerobic, membrane anchor polypeptide K00247; Psort location: CytoplasmicMembrane, score: 10.00.
       0.792
EFB75427.1
KEGG: cac:CAC0282 1.3e-97 cytosine/guanine deaminase related protein K01487; Psort location: Cytoplasmic, score: 8.96.
    
 0.738
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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