STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76781.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46. (159 aa)    
Predicted Functional Partners:
yabP
Sporulation protein YabP.
       0.773
EFB76783.1
S4 domain protein; KEGG: cph:Cpha266_1633 4.0e-06 pseudouridine synthase, RluA family K01718.
       0.705
EFB76780.1
Septum formation initiator.
       0.574
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.538
EFB76779.1
S1 RNA binding domain protein; KEGG: saa:SAUSA300_0486 8.4e-25 polyribonucleotide nucleotidyltransferase K00962; Psort location: Cytoplasmic, score: 9.26.
       0.422
EFB76785.1
MazG family protein; KEGG: pha:PSHAa0740 1.3e-28 mazG; nucleoside triphosphate pyrophosphohydrolase, non-specific K02428; Psort location: Cytoplasmic, score: 8.96.
       0.409
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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