STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76783.1S4 domain protein; KEGG: cph:Cpha266_1633 4.0e-06 pseudouridine synthase, RluA family K01718. (83 aa)    
Predicted Functional Partners:
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.972
rplQ
Ribosomal protein L17; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.961
FbpA
Fibronectin-binding protein A domain protein; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.959
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.958
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
   0.955
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.955
rpmF
Ribosomal protein L32; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.955
rpmA
Ribosomal protein L27; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.955
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.955
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.955
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.