STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76821.1Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 10.00. (436 aa)    
Predicted Functional Partners:
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.783
EFB77017.1
Putative stage V sporulation protein T; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.770
EFB74909.1
KEGG: bha:BH0078 1.6e-31 spoIIE; stage II sporulation protein E K06382; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.714
EFB76373.1
Putative stage II sporulation protein R.
  
     0.710
yabP
Sporulation protein YabP.
 
  
 0.703
EFB77154.1
Putative anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
     0.696
EFB76443.1
Putative sporulation transcriptional regulator SpoIIID.
  
  
 0.683
EFB76567.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.681
EFB76798.1
Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.681
spoVAD
Stage V sporulation protein AD.
  
     0.657
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.