STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76372.1Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase. (1094 aa)    
Predicted Functional Partners:
EFB76371.1
Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
 
 0.999
EFB76370.1
Hypothetical protein.
       0.762
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.630
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
       0.602
EFB76373.1
Putative stage II sporulation protein R.
 
     0.584
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.576
nusG
Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.
       0.549
EFB76999.1
Hypothetical protein; KEGG: pat:Patl_2091 4.5e-08 copper-translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.499
EFB76701.1
DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
     0.493
EFB76684.1
Hypothetical protein.
  
     0.492
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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