STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76394.1Peptidase, M23 family; KEGG: ava:Ava_4929 3.9e-14 peptidase M23B K08259. (410 aa)    
Predicted Functional Partners:
EFB76393.1
Peptidase, M23 family; KEGG: abo:ABO_1060 8.8e-15 rne; phosphoric diester hydrolase K08300; Psort location: OuterMembrane, score: 9.83.
 
    
0.647
EFB75564.1
Hypothetical protein.
  
     0.644
EFB76086.1
SpoIID/LytB domain protein; KEGG: cal:orf19.575 0.00020 HYR5; similar to HYR1 K01186; Belongs to the CinA family.
 
     0.630
EFB76819.1
Repeat protein; KEGG: cal:orf19.4072 0.0013 HYR10; similar to cell surface flocculin K01186.
  
    0.616
EFB75647.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.587
EFB75199.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.579
EFB75538.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.568
EFB76999.1
Hypothetical protein; KEGG: pat:Patl_2091 4.5e-08 copper-translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.549
EFB76144.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.542
EFB77228.1
3D domain protein.
 
    0.469
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.