STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75636.1Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: tte:TTE1314 2.5e-71 dacC2; D-alanyl-D-alanine carboxypeptidase K07258; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the peptidase S11 family. (405 aa)    
Predicted Functional Partners:
EFB77038.1
Penicillin-binding protein dimerization domain protein; KEGG: swo:Swol_0820 6.6e-48 peptidoglycan glycosyltransferase K05364.
 
 
 0.899
EFB75832.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: swo:Swol_0820 1.2e-64 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 8.02.
  
 
 0.872
EFB77137.1
KEGG: gme:Gmet_0406 2.3e-32 penicillin-binding protein, transpeptidase K03587; Psort location: CytoplasmicMembrane, score: 8.02.
  
 
 0.871
EFB76992.1
Putative peptidoglycan binding domain protein; KEGG: bcl:ABC2815 2.9e-07 N-acetylmuramoyl-L-alanine amidase K01446.
  
 
 0.870
EFB75469.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: mgm:Mmc1_1415 2.3e-54 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.870
EFB76358.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: tte:TTE0925 4.5e-33 dacC; D-alanyl-D-alanine carboxypeptidase K01286; Psort location: Periplasmic, score: 9.44; Belongs to the peptidase S11 family.
 
  
 
0.867
EFB76993.1
Putative peptidoglycan binding domain protein; KEGG: bha:BH3665 1.2e-19 lytC; N-acetylmuramoyl-L-alanine amidase, major autolysin K01448.
  
 
 0.838
EFB77326.1
Transglycosylase; KEGG: nme:NMB1807 5.1e-35 penicillin-binding protein 1A (penicillin-insensitive transglycosylase / penicillin-sensitive transpeptidase) K05366.
  
 
 0.825
EFB75920.1
Transglycosylase; KEGG: tte:TTE0314 5.3e-62 mrcA; Membrane carboxypeptidase (penicillin-binding protein) K05366.
  
 
 0.825
spoVAD
Stage V sporulation protein AD.
 
   
 0.722
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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