STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75642.1Peptidase, M23 family; KEGG: ava:Ava_4756 2.5e-19 peptidase M23B K08259; Psort location: CytoplasmicMembrane, score: 9.46. (570 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
     0.634
EFB76550.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: swo:Swol_0489 4.6e-49 peptidoglycan glycosyltransferase K05364.
  
     0.538
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
  0.525
EFB77326.1
Transglycosylase; KEGG: nme:NMB1807 5.1e-35 penicillin-binding protein 1A (penicillin-insensitive transglycosylase / penicillin-sensitive transpeptidase) K05366.
  
     0.487
EFB75920.1
Transglycosylase; KEGG: tte:TTE0314 5.3e-62 mrcA; Membrane carboxypeptidase (penicillin-binding protein) K05366.
  
     0.477
EFB77228.1
3D domain protein.
 
    0.445
EFB75643.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.441
EFB75832.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: swo:Swol_0820 1.2e-64 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 8.02.
 
   
 0.438
EFB76086.1
SpoIID/LytB domain protein; KEGG: cal:orf19.575 0.00020 HYR5; similar to HYR1 K01186; Belongs to the CinA family.
 
     0.436
EFB74767.1
KEGG: nar:Saro_2317 8.8e-15 N-acetylmuramoyl-L-alanine amidase K01446.
 
   
 0.425
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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