STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75718.1KEGG: tde:TDE0756 3.9e-66 iron compound ABC transporter, ATP-binding protein, putative K02013; Psort location: Cytoplasmic, score: 9.12. (257 aa)    
Predicted Functional Partners:
EFB75719.1
Iron chelate uptake ABC transporter, FeCT family, permease protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.999
EFB75699.1
Iron chelate uptake ABC transporter, FeCT family, permease protein; KEGG: rma:Rmag_0249 0.0030 proton-translocating NADH-quinone oxidoreductase, chain M K05903; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.998
EFB75720.1
Periplasmic binding protein.
 
 0.995
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
 
  0.966
EFB74420.1
Periplasmic binding protein.
 
 0.962
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
      0.924
EFB77383.1
Fibro-slime domain protein; KEGG: cal:orf19.1725 0.00056 hypothetical protein, serine/threonine rich K00960; Psort location: OuterMembrane, score: 9.49.
  
 0.912
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
    
 0.839
cobU
Adenosylcobinamide kinase/adenosylcobinamidephosphate guanylyltransferase; KEGG: cpe:CPE1035 2.0e-23 probable cobinamide kinase/cobinamide phosphate guanylyltransferase K02231; Psort location: Cytoplasmic, score: 8.96.
    
  0.818
EFB75705.1
Hypothetical protein; KEGG: sil:SPO0405 2.1e-12 cobinamide kinase/cobinamide phosphate guanyltransferase K02231.
    
  0.811
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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