STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75890.1UbiC transcription regulator-associated domain protein; KEGG: btk:BT9727_3183 2.5e-08 transcriptional regulator, GntR family; Psort location: Cytoplasmic, score: 8.96. (260 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; KEGG: ctc:CTC01741 3.5e-296 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.813
EFB74583.1
Hypothetical protein; KEGG: ctc:CTC01741 1.0e-113 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.813
nth
Putative endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.773
EFB77359.1
Transcriptional regulator, AraC family; KEGG: eca:ECA2408 3.4e-19 paeX; pectin acetylesterase; Psort location: Cytoplasmic, score: 9.26.
  
    0.544
EFB75731.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 4.9e-20 adaA; methylphosphotriester-DNA alkyltransferase (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.26.
  
    0.544
EFB76019.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 1.3e-11 adaA; methylphosphotriester-DNA alkyltransferase (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.26.
  
    0.544
EFB74844.1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 1.3e-10 ADA regulatory protein K00567.
  
    0.544
EFB74349.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 1.1e-10 adaA; methylphosphotriester-DNA alkyltransferase (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.97.
  
    0.544
EFB74283.1
Transcriptional regulator, AraC family; KEGG: bli:BL05281 1.5e-08 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.26.
  
    0.544
pyrB
KEGG: cac:CAC2654 1.3e-104 aspartate carbamoyltransferase catalytic subunit K00609; Psort location: Cytoplasmic, score: 9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.539
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.