EFB75982.1 protein (Subdoligranulum variabile)

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Score

EFB75982.1

Sigma-70, region 4. (160 aa)

Predicted Functional Partners:

EFB76961.1

0.605

rpoC

0.602

rpoB

0.582

rpoA

0.527

topA

0.442

EFB75650.1

0.423

Your Current Organism:

Subdoligranulum variabile

NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFB75650.1	EFB75982.1	SUBVAR_05424	SUBVAR_05762	KEGG: cpf:CPF_1991 1.0e-90 protein kinase K08884; Psort location: CytoplasmicMembrane, score: 9.82.	Sigma-70, region 4.	0.423
EFB75650.1	EFB76961.1	SUBVAR_05424	SUBVAR_04583	KEGG: cpf:CPF_1991 1.0e-90 protein kinase K08884; Psort location: CytoplasmicMembrane, score: 9.82.	Hypothetical protein.	0.542
EFB75982.1	EFB75650.1	SUBVAR_05762	SUBVAR_05424	Sigma-70, region 4.	KEGG: cpf:CPF_1991 1.0e-90 protein kinase K08884; Psort location: CytoplasmicMembrane, score: 9.82.	0.423
EFB75982.1	EFB76961.1	SUBVAR_05762	SUBVAR_04583	Sigma-70, region 4.	Hypothetical protein.	0.605
EFB75982.1	rpoA	SUBVAR_05762	SUBVAR_05893	Sigma-70, region 4.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.527
EFB75982.1	rpoB	SUBVAR_05762	SUBVAR_05130	Sigma-70, region 4.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.582
EFB75982.1	rpoC	SUBVAR_05762	SUBVAR_05128	Sigma-70, region 4.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.602
EFB75982.1	topA	SUBVAR_05762	SUBVAR_06432	Sigma-70, region 4.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.442
EFB76961.1	EFB75650.1	SUBVAR_04583	SUBVAR_05424	Hypothetical protein.	KEGG: cpf:CPF_1991 1.0e-90 protein kinase K08884; Psort location: CytoplasmicMembrane, score: 9.82.	0.542
EFB76961.1	EFB75982.1	SUBVAR_04583	SUBVAR_05762	Hypothetical protein.	Sigma-70, region 4.	0.605
rpoA	EFB75982.1	SUBVAR_05893	SUBVAR_05762	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sigma-70, region 4.	0.527
rpoA	rpoB	SUBVAR_05893	SUBVAR_05130	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	SUBVAR_05893	SUBVAR_05128	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	topA	SUBVAR_05893	SUBVAR_06432	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.916
rpoB	EFB75982.1	SUBVAR_05130	SUBVAR_05762	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sigma-70, region 4.	0.582
rpoB	rpoA	SUBVAR_05130	SUBVAR_05893	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	SUBVAR_05130	SUBVAR_05128	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	EFB75982.1	SUBVAR_05128	SUBVAR_05762	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sigma-70, region 4.	0.602
rpoC	rpoA	SUBVAR_05128	SUBVAR_05893	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	rpoB	SUBVAR_05128	SUBVAR_05130	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999