STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76064.1Putative phage portal protein, HK97 family. (393 aa)    
Predicted Functional Partners:
EFB76066.1
Putative phage major capsid protein, HK97 family.
  
 
 0.964
EFB76068.1
Putative phage head-tail adaptor.
  
 
 0.948
EFB75497.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 4.5e-33 exo-poly-alpha-D-galacturonosidase, putative K01238; Psort location: Extracellular, score: 9.45; Belongs to the glycosyl hydrolase 28 family.
  
   0.938
EFB76065.1
Phage prohead protease, HK97 family.
     
 0.826
EFB76067.1
Hypothetical protein.
       0.775
EFB76069.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.766
EFB76071.1
Phage major tail protein, phi13 family.
       0.766
EFB76070.1
Hypothetical protein.
       0.757
EFB76072.1
Hypothetical protein.
       0.638
EFB76074.1
Phage tail tape measure protein, TP901 family; KEGG: lla:L145238 0.0026 yleD; sucrose-specific PTS system IIBC component K02809:K02810; Psort location: CytoplasmicMembrane, score: 9.46.
       0.541
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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