STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76175.1SPFH/Band 7/PHB domain protein; KEGG: reh:H16_A2036 1.7e-51 membrane protease subunits, stomatin/prohibitin homologs K01423. (300 aa)    
Predicted Functional Partners:
hflB
ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.994
hflB-2
ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.994
EFB76176.1
Nodulation efficiency protein D; KEGG: reh:H16_A2767 4.1e-06 membrane-bound serine protease, S49 family; Psort location: CytoplasmicMembrane, score: 9.46.
 
  
 0.949
EFB74502.1
Hypothetical protein.
   
 0.934
EFB75101.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.921
EFB75514.1
ATPase, AAA family; KEGG: ava:Ava_0068 0.00078 AAA ATPase, central region.
  
 0.903
EFB75723.1
KEGG: ctc:CTC01806 7.8e-196 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; Psort location: Cytoplasmic, score: 8.96.
   
  0.854
EFB75912.1
Peptidase M16 inactive domain protein; KEGG: bcz:BCZK3546 5.9e-63 insulysin, peptidase family M16 (insulinase) K01408; Psort location: Cytoplasmic, score: 8.96.
  
 0.734
EFB75913.1
Peptidase M16 inactive domain protein; KEGG: lwe:lwe1408 9.7e-31 zinc metallopeptidase, putative K01423.
  
 0.734
EFB76178.1
Alpha amylase, catalytic domain protein; KEGG: lsl:LSL_1289 1.1e-100 amyA; alpha-amylase K01176; Psort location: Cytoplasmic, score: 9.26.
   
   0.592
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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