STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76288.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (593 aa)    
Predicted Functional Partners:
EFB76289.1
ABC transporter, ATP-binding protein; KEGG: ava:Ava_3347 3.7e-54 ABC transporter-like K01990.
  
    0.798
EFB76290.1
ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.767
EFB76287.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.727
EFB76291.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.690
EFB76292.1
GDSL-like protein; KEGG: rba:RB973 0.00033 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) K01137.
       0.654
EFB76286.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.646
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.