STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75385.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46. (115 aa)    
Predicted Functional Partners:
EFB75386.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
    0.921
EFB75387.1
Glycosyltransferase, group 2 family protein; KEGG: lic:LIC12179 4.0e-57 sugar transferase; Psort location: CytoplasmicMembrane, score: 9.46.
  
  
 0.778
wecE
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase; KEGG: eci:UTI89_C4347 1.5e-135 rffA, rff, fcnA, wecE, G349, yifI; TDP-4-oxo-6-deoxy-D-glucose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.773
EFB75389.1
Acetyltransferase, GNAT family; KEGG: btk:BT9727_4499 6.7e-16 possible acetyltransferase, GNAT family K00680; Psort location: Cytoplasmic, score: 8.96.
       0.747
EFB75388.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.746
EFB75390.1
Tat pathway signal sequence domain protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.746
EFB74402.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 9.46.
    
  0.556
EFB75392.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.538
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
    
   0.440
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.432
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.