STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75349.1ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00. (281 aa)    
Predicted Functional Partners:
EFB75351.1
ABC transporter, solute-binding protein.
 
 0.996
EFB75350.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 0.987
EFB75594.1
KEGG: sth:STH1782 3.3e-117 sugar ABC transportor ATP-binding protein K05816; Psort location: Cytoplasmic, score: 9.12; Belongs to the ABC transporter superfamily.
 
 0.976
EFB77382.1
KEGG: sth:STH1782 1.7e-97 sugar ABC transportor ATP-binding protein K05816; Belongs to the ABC transporter superfamily.
 
 0.975
EFB77412.1
KEGG: sil:SPO0237 3.3e-69 upgC; SN-glycerol-3-phosphate ABC transporter, ATP-binding protein K05816; Psort location: Cytoplasmic, score: 9.12.
 
 0.944
EFB77444.1
ABC transporter, permease protein; KEGG: baa:BA_0884 0.00058 binding-protein-dependent transport systems inner membrane component K00294; Psort location: CytoplasmicMembrane, score: 10.00.
 0.928
EFB74949.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 0.913
EFB74552.1
KEGG: ava:Ava_0243 0.00066 molybdate ABC transporter, permease protein K02018; Psort location: CytoplasmicMembrane, score: 10.00.
 0.912
EFB75971.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 0.911
EFB75224.1
KEGG: cya:CYA_1846 2.1e-05 modB; molybdate ABC transporter, permease protein K02018; Psort location: CytoplasmicMembrane, score: 10.00.
 0.909
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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