STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75249.1Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 6.4e-06 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; Psort location: Cytoplasmic, score: 8.96. (237 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.790
EFB75256.1
KEGG: mta:Moth_0429 4.1e-142 mannitol dehydrogenase K00040; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.775
EFB75250.1
Hypothetical protein.
       0.701
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.669
EFB75252.1
TRAP transporter, DctQ-like membrane protein; Psort location: CytoplasmicMembrane, score: 9.46.
 
     0.656
EFB74281.1
KEGG: mta:Moth_0429 3.5e-161 mannitol dehydrogenase K00040.
   
 0.649
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; KEGG: gox:GOX0030 2.8e-40 HemK family protein K02493.
   
   0.621
EFB75253.1
TRAP transporter, DctM subunit; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.602
EFB75251.1
TRAP transporter solute receptor, DctP family.
 
     0.601
EFB77518.1
D-mannonate dehydratase (UxuA); Catalyzes the dehydration of D-mannonate.
 
   
 0.598
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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