STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75270.1Putative permease; KEGG: hpa:HPAG1_1114 6.0e-06 hypothetical protein K00760; Psort location: CytoplasmicMembrane, score: 10.00. (507 aa)    
Predicted Functional Partners:
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
  
 0.966
EFB75267.1
KEGG: mta:Moth_1960 9.6e-127 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K00087; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.829
EFB75269.1
FAD binding domain in molybdopterin dehydrogenase; KEGG: pai:PAE1939 4.8e-11 carbon monoxide dehydrogenase medium subunit, conjectural K03519.
 
  
 0.819
pyrB
KEGG: cac:CAC2654 1.3e-104 aspartate carbamoyltransferase catalytic subunit K00609; Psort location: Cytoplasmic, score: 9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
 0.810
EFB75935.1
Amidohydrolase family protein; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
  
 0.807
pyrF
KEGG: ctc:CTC02381 5.7e-81 pyrF; orotidine 5'-phosphate decarboxylase K01591; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
  
 0.803
carB
KEGG: cpe:CPE2572 0. carB; carbamoyl-phosphate synthetase catalytic subunit K01955; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.784
carA
KEGG: pca:Pcar_1613 1.5e-87 carbamoyl-phosphate synthase small subunit K01956; Belongs to the CarA family.
  
  
 0.784
EFB75268.1
2Fe-2S iron-sulfur cluster-binding domain protein; KEGG: sto:ST0561 4.7e-31 carbon monoxide dehydrogenase K03518; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.751
EFB75825.1
KEGG: blo:BL1108 0. purL; phosphoribosylformylglycinamidine synthase K01952.
  
  
 0.748
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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