STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agcS-3Amino acid carrier protein; KEGG: hpa:HPAG1_0925 1.2e-94 D-alanine glycine permease K01613; Psort location: CytoplasmicMembrane, score: 10.00. (460 aa)    
Predicted Functional Partners:
EFB75271.1
Transcriptional regulator, LysR family.
       0.488
EFB75996.1
Chloride transporter, ClC family; KEGG: cpr:CPR_1400 1.7e-13 chloride channel protein K01529; Psort location: CytoplasmicMembrane, score: 10.00.
   
    0.476
EFB75273.1
KEGG: shn:Shewana3_0031 2.1e-06 potassium uptake protein, TrkH family K00961; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.470
EFB75274.1
TrkA N-terminal domain protein.
       0.431
EFB75031.1
Putative sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.409
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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