STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75336.1KEGG: bca:BCE_0308 1.3e-35 aspartate racemase K01779; Belongs to the aspartate/glutamate racemases family. (230 aa)    
Predicted Functional Partners:
purF
Amidophosphoribosyltransferase; KEGG: cac:CAC1392 1.7e-97 purF; glutamine phosphoribosylpyrophosphate amidotransferase K00764; Psort location: Cytoplasmic, score: 8.96.
   
 
  0.838
pyrB
KEGG: cac:CAC2654 1.3e-104 aspartate carbamoyltransferase catalytic subunit K00609; Psort location: Cytoplasmic, score: 9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.836
EFB76084.1
L-asparaginase, type I; KEGG: ctc:CTC01877 1.5e-75 L-asparaginase K01424; Psort location: Cytoplasmic, score: 9.97.
    
 0.829
speB
Agmatinase; KEGG: cpr:CPR_0516 3.1e-82 speB; agmatinase K01480; Psort location: Cytoplasmic, score: 8.96; Belongs to the arginase family.
    
  0.808
EFB76375.1
Aminotransferase, class I/II; KEGG: chy:CHY_0115 8.1e-114 putative aspartate aminotransferase; Psort location: Cytoplasmic, score: 8.96.
    
  0.798
EFB74587.1
Aminotransferase, class I/II; KEGG: blo:BL0783 4.0e-144 probable aminotransferase K00811; Psort location: Cytoplasmic, score: 8.96.
    
  0.798
EFB74663.1
Hypothetical protein; KEGG: dra:DR0668 0.00047 carbamoyl-phosphate synthase large chain K01955.
 
     0.787
EFB77477.1
Hypothetical protein; KEGG: sth:STH2182 0.00052 pyruvate carboxylase K01959:K01960; Psort location: Cytoplasmic, score: 8.96.
 
     0.782
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.758
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.710
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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