STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepD-2Dipeptidase; KEGG: blo:BL0479 1.9e-135 pepD; dipeptidase K08659; Psort location: Cytoplasmic, score: 8.96. (527 aa)    
Predicted Functional Partners:
EFB74502.1
Hypothetical protein.
     
 0.899
pdxB-5
KEGG: rba:RB8859 6.7e-87 ldhA; D-lactate dehydrogenase (fermentative) K03778; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
    0.589
pdxB
KEGG: cac:CAC0089 7.2e-74 serA; D-3-phosphoglycerate dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
    0.548
EFB75138.1
Hypothetical protein.
       0.542
EFB75137.1
KEGG: rha:RHA1_ro05622 5.2e-32 response regulator (protein-glutamate methylesterase) K07669; Psort location: Cytoplasmic, score: 9.97.
       0.414
EFB75139.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bca:BCE_2042 1.6e-44 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
       0.414
EFB75140.1
Hypothetical protein.
       0.414
EFB75141.1
Hypothetical protein.
       0.414
EFB75142.1
Hypothetical protein.
       0.414
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.