STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75120.1Hypothetical protein; KEGG: cgb:cg2950 0.0021 radA; probable ATP-dependent protease, DNA repair (ATP-binding) K04485. (417 aa)    
Predicted Functional Partners:
EFB75121.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB75122.1
Relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.737
EFB76738.1
Hypothetical protein.
  
     0.710
EFB75118.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.703
recX
Putative regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
  
 0.659
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.653
EFB75014.1
DNA-binding helix-turn-helix protein.
  
     0.629
EFB76737.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.600
EFB76735.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.483
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
  
  
 0.473
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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