STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75096.1Orn/Lys/Arg decarboxylase, major domain protein; KEGG: gvi:gll3487 3.0e-43 lysine decarboxylase K01582; Psort location: Cytoplasmic, score: 8.96. (249 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
 
 
 0.904
speB
Agmatinase; KEGG: cpr:CPR_0516 3.1e-82 speB; agmatinase K01480; Psort location: Cytoplasmic, score: 8.96; Belongs to the arginase family.
 
 
 0.865
EFB76715.1
Hypothetical protein; KEGG: ctc:CTC00220 3.8e-52 thymidylate kinase K00943.
 
 
  0.838
EFB76707.1
KEGG: spr:spr1792 7.3e-145 lysA; diaminopimelate decarboxylase K01586; Psort location: Cytoplasmic, score: 8.96.
    
 0.816
argH
Argininosuccinate lyase; KEGG: dsy:DSY0786 5.7e-129 hypothetical protein K01755; Psort location: Cytoplasmic, score: 8.96.
     
 0.810
argD
Aminotransferase, acetylornithine/succinylornithine family; KEGG: hdu:HD0892 1.1e-107 argD; acetylornithine aminotransferase K00818; Psort location: Cytoplasmic, score: 8.96; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.805
argD-2
Aminotransferase, acetylornithine/succinylornithine family; KEGG: cje:Cj0227 1.6e-101 argD; acetylornithine aminotransferase K00818.
  
 
 0.805
EFB76005.1
ATPase family associated with various cellular activities (AAA); Psort location: Cytoplasmic, score: 8.96.
   
 
 0.709
EFB76101.1
Aluminum resistance protein; KEGG: ava:Ava_4213 2.0e-85 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K01758; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.700
EFB75078.1
six-Cys-in-45 modification radical SAM protein; KEGG: mka:MK1086 0.0044 ferredoxin domain fused to pyruvate-formate lyase-activating enzyme K04069; Psort location: Cytoplasmic, score: 8.96.
 
     0.619
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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