STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75094.1Hypothetical protein; KEGG: ade:Adeh_2111 0.0011 glyoxalase I K01759. (116 aa)    
Predicted Functional Partners:
EFB75095.1
KEGG: mac:MA3031 7.9e-29 ribonuclease Z K00784; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB75093.1
Acetyltransferase, GNAT family; KEGG: tth:TTC1810 2.8e-08 acetyltransferase K00680.
  
    0.738
EFB75091.1
KEGG: azo:azo0200 1.2e-47 sbcC; exonuclease SbcC, putative K01146; Psort location: Cytoplasmic, score: 8.96.
       0.737
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.737
EFB76573.1
KEGG: ctc:CTC01025 1.1e-17 heptaprenyl diphosphate synthase component I K00805; Psort location: CytoplasmicMembrane, score: 9.46.
  
    0.667
EFB76614.1
KEGG: reu:Reut_A0881 3.4e-60 polyprenyl synthetase K00795; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
  
 
  0.645
EFB75085.1
KEGG: ctc:CTC02190 5.5e-21 ribonuclease Z K00784.
       0.527
EFB75097.1
Hypothetical protein; KEGG: ctc:CTC00579 1.2e-40 sbcC; exonuclease sbcC K03546; Psort location: Cytoplasmic, score: 8.96.
       0.504
EFB75084.1
Hypothetical protein.
       0.403
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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