STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75067.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46. (406 aa)    
Predicted Functional Partners:
EFB75036.1
KEGG: noc:Noc_2142 1.5e-43 ABC transporter, ATPase subunit; Psort location: Cytoplasmic, score: 9.12.
 
  0.884
EFB75068.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.752
EFB75459.1
ABC-2 type transporter; KEGG: fal:FRAAL4153 1.9e-23 putative ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.685
EFB75460.1
KEGG: fal:FRAAL1581 3.7e-60 putative ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 7.88.
  
 0.685
EFB77029.1
KEGG: fal:FRAAL5527 4.3e-28 antibiotic resistance ATP-binding protein K06020.
  
  0.670
EFB75767.1
KEGG: noc:Noc_2142 2.3e-52 ABC transporter, ATPase subunit; Psort location: Cytoplasmic, score: 9.12.
  
  0.670
EFB74390.1
KEGG: noc:Noc_2142 3.9e-50 ABC transporter, ATPase subunit; Psort location: Cytoplasmic, score: 9.12.
  
  0.670
EFB77208.1
KEGG: fal:FRAAL1877 1.6e-44 putative ABC transporter ATP-binding protein.
  
  0.665
EFB77316.1
KEGG: fal:FRAAL1877 3.8e-45 putative ABC transporter ATP-binding protein.
  
  0.665
EFB76637.1
ABC transporter, ATP-binding protein; KEGG: bur:Bcep18194_A5826 1.6e-69 ABC branched-chain amino acid family transporter, ATPase subunit K01996; Psort location: Cytoplasmic, score: 9.12.
  
  0.665
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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