STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB75037.1S-adenosylmethionine-dependent methyltransferase, YraL family; KEGG: btl:BALH_0032 1.3e-49 cobA; uroporphyrin-III C-methyltransferase K00589; Psort location: Cytoplasmic, score: 8.96. (254 aa)    
Predicted Functional Partners:
EFB75038.1
Hypothetical protein.
       0.701
nifJ
Pyruvate synthase; KEGG: ctc:CTC01741 3.5e-296 pyruvate-flavodoxin oxidoreductase K03737.
   
 
 0.685
EFB74583.1
Hypothetical protein; KEGG: ctc:CTC01741 1.0e-113 pyruvate-flavodoxin oxidoreductase K03737.
   
 
 0.685
EFB75039.1
Nitrogen regulatory protein P-II; KEGG: ter:Tery_3993 1.1e-70 adenylate/guanylate cyclase K01769; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the P(II) protein family.
  
    0.659
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
   0.594
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
   
 0.590
EFB74748.1
Hypothetical protein; KEGG: lsa:LSA1267 1.7e-08 putative methyltransferase K00599.
  
  
 0.590
EFB74434.1
Hypothetical protein; KEGG: lsa:LSA1267 3.2e-10 putative methyltransferase K00599.
  
  
 0.590
gidB
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
 
   
 0.569
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.551
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.