STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74945.1KEGG: bcl:ABC2313 3.9e-43 rpe; ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 8.96. (226 aa)    
Predicted Functional Partners:
EFB74943.1
Transketolase, thiamine diphosphate binding domain protein; KEGG: chy:CHY_0165 1.6e-76 putative transketolase, N-terminal subunit K00615; Psort location: Cytoplasmic, score: 8.96.
 
 0.923
fsa-2
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 0.897
EFB74944.1
Transketolase, pyridine binding domain protein; KEGG: cpf:CPF_0293 6.8e-94 putative transketolase, C-terminal subunit K00615; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.870
EFB77565.1
Transketolase, thiamine diphosphate binding domain protein; KEGG: lmf:LMOf2365_1053 4.2e-78 transketolase, N-terminal subunit K00615.
 
 0.859
EFB75161.1
Transketolase, thiamine diphosphate binding domain protein; KEGG: cpr:CPR_0287 5.9e-79 transketolase K00615; Psort location: Cytoplasmic, score: 8.96.
 
 0.859
EFB77611.1
KEGG: sak:SAK_1830 8.3e-89 araD; L-ribulose-5-phosphate 4-epimerase K01786.
    
 0.852
nifJ
Pyruvate synthase; KEGG: ctc:CTC01741 3.5e-296 pyruvate-flavodoxin oxidoreductase K03737.
    
 0.837
EFB74583.1
Hypothetical protein; KEGG: ctc:CTC01741 1.0e-113 pyruvate-flavodoxin oxidoreductase K03737.
    
 0.837
EFB76936.1
Kinase, PfkB family; KEGG: mta:Moth_0419 1.1e-109 pfkB; PfkB K00874; Psort location: Cytoplasmic, score: 8.96.
  
 0.835
rpiB
KEGG: tte:TTE0146 9.3e-42 rpiB; ribose 5-phosphate isomerase B K01808; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.833
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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