STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74964.1Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 1.8e-13 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00. (311 aa)    
Predicted Functional Partners:
EFB74965.1
KEGG: bja:blr2270 1.8e-20 sugar ABC transporter ATP-binding protein K02056; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.971
EFB74963.1
Hypothetical protein; KEGG: msm:MSMEG_3095 9.0e-16 D-ribose-binding periplasmic protein.
 
 0.953
EFB74962.1
KEGG: atc:AGR_C_5112 1.2e-117 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.926
EFB76430.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 5.6e-15 D-ribose-binding periplasmic protein; Psort location: Periplasmic, score: 9.44.
 
 0.909
EFB74820.1
ABC transporter, ATP-binding protein; KEGG: sme:SMb21588 5.0e-137 putative sugar uptake ABC transporter ATP-binding protein K02056; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.875
EFB74377.1
KEGG: gka:GK1909 6.8e-110 araG; ABC transporter (ATP-binding protein) K02056; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.866
EFB74821.1
Hypothetical protein; KEGG: msm:MSMEG_3095 4.6e-15 D-ribose-binding periplasmic protein; Psort location: Periplasmic, score: 9.44.
 
 0.862
EFB74825.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.6e-14 D-ribose-binding periplasmic protein.
 
 0.841
EFB74376.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_1706 7.5e-72 xylose transport system permease protein XylH; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
  0.829
EFB76602.1
KEGG: tde:TDE2216 1.7e-175 mglA; galactoside ABC transporter, ATP-binding protein K02056; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.822
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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