STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74860.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (112 aa)    
Predicted Functional Partners:
EFB74858.1
Copper-exporting ATPase; KEGG: efa:EF0298 3.8e-191 copper-translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.942
EFB74857.1
Heavy metal-associated domain protein; KEGG: bps:BPSS0224 2.6e-07 putative cation-transporting ATPase membrane protein K01533.
 
  
 0.928
EFB75043.1
Copper-exporting ATPase; KEGG: tde:TDE0008 6.3e-194 copper-translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.734
EFB77365.1
Putative esterase; KEGG: efa:EF0786 2.2e-40 tributyrin esterase, putative K03930.
  
  
 0.678
EFB74859.1
Hypothetical protein.
       0.572
EFB76871.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.96.
    
   0.525
EFB77156.1
Sigma-70 region 2; KEGG: reh:H16_A2725 2.8e-16 rpoD1; DNA-directed RNA polymerase sigma subunit (RpoD) K00960; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family.
    
   0.525
EFB75396.1
Sigma-70, region 4; KEGG: reh:H16_A1626 1.1e-06 rpoD1; DNA-directed RNA polymerase sigma subunit (RpoD) K00960; Psort location: Cytoplasmic, score: 8.96.
    
   0.525
EFB75410.1
Sigma-70 region 2; KEGG: reh:H16_A2373 7.2e-09 rpoS; DNA-directed RNA polymerase sigma subunit (sigma38) K00960; Belongs to the sigma-70 factor family.
    
   0.525
EFB76684.1
Hypothetical protein.
  
    0.421
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.