STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74751.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (325 aa)    
Predicted Functional Partners:
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.968
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.888
EFB75825.1
KEGG: blo:BL1108 0. purL; phosphoribosylformylglycinamidine synthase K01952.
     
 0.873
EFB74752.1
Glycosyltransferase, group 1 family protein; KEGG: azo:azo3268 5.9e-14 glycosyltransferase K00754.
 
     0.863
EFB74755.1
Glycosyltransferase, family 11; KEGG: sat:SYN_02664 5.7e-26 alpha-1,2-fucosyltransferase K00754.
 
     0.861
EFB75723.1
KEGG: ctc:CTC01806 7.8e-196 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; Psort location: Cytoplasmic, score: 8.96.
    
 0.839
rpiB
KEGG: tte:TTE0146 9.3e-42 rpiB; ribose 5-phosphate isomerase B K01808; Psort location: Cytoplasmic, score: 8.96.
     
 0.815
rpiB-2
Ribose-5-phosphate isomerase B; KEGG: cno:NT01CX_0543 5.7e-42 rpiB; ribose 5-phosphate isomerase B K01806; Psort location: Cytoplasmic, score: 8.96.
     
 0.815
EFB74750.1
Glycosyltransferase, group 1 family protein; KEGG: rba:RB3591 5.0e-43 putative transferase; Psort location: Cytoplasmic, score: 8.96.
 
     0.806
EFB74754.1
Glycosyltransferase, group 1 family protein; KEGG: lsl:LSL_1559 4.0e-25 rfaG; glycosyltransferase K00754; Psort location: Cytoplasmic, score: 8.96.
 
     0.785
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.