STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74739.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (584 aa)    
Predicted Functional Partners:
EFB74737.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.762
EFB74738.1
Hypothetical protein; KEGG: hsa:26301 6.5e-08 GBGT1; globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 K00722; Psort location: Cytoplasmic, score: 8.96.
       0.762
EFB74736.1
Hypothetical protein.
       0.658
EFB74740.1
Glycosyltransferase, group 2 family protein; KEGG: mta:Moth_2228 3.6e-11 glycosyl transferase, family 2.
       0.566
EFB74741.1
NAD dependent epimerase/dehydratase family protein; KEGG: mth:MTH380 3.4e-35 UDP-glucose 4-epimerase K01784; Psort location: Cytoplasmic, score: 8.96.
       0.548
EFB74742.1
Hypothetical protein; KEGG: rpa:RPA3919 0.00088 possible mannose-1-phosphate guanyltransferase K00966; Psort location: Cytoplasmic, score: 8.96.
       0.504
mprF
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
       0.504
EFB74756.1
Glycosyltransferase, group 2 family protein; KEGG: bce:BC5429 5.3e-23 beta-1,3-N-acetylglucosaminyltransferase K00754.
       0.454
EFB74744.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.443
EFB74745.1
HAD hydrolase, family IA, variant 3; KEGG: tth:TTC1471 2.1e-19 phosphoglycolate phosphatase K01091; Psort location: Cytoplasmic, score: 8.96.
       0.443
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.