STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74344.1Kinase, PfkB family; KEGG: rha:RHA1_ro02785 6.7e-15 carbohydrate kinase K00924. (353 aa)    
Predicted Functional Partners:
EFB74346.1
KEGG: dge:Dgeo_2692 8.1e-43 xylose isomerase K01805; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.963
EFB74348.1
Oxidoreductase, NAD-binding domain protein; KEGG: ret:RHE_CH03642 3.7e-86 probable oxidoreductase protein K00100; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.892
EFB74345.1
KEGG: sdy:SDY_4132 8.8e-53 putative aldolase K01624.
 
 
 0.880
EFB76676.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vch:VC1822 3.7e-20 PTS system, fructose-specific IIABC component K02768:K02769:K02770.
  
 
 0.879
EFB75593.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: cpf:CPF_0564 1.1e-123 fruA; PTS system, fructose-specific, IIABC component K02768:K02769; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.879
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
 0.869
EFB74347.1
KEGG: hma:rrnAC0265 3.3e-21 apl; AP-endonuclease/AP-lyase K01151:K01741; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.867
EFB76517.1
KEGG: gka:GK3304 2.1e-108 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809.
    
 0.833
rpiB
KEGG: tte:TTE0146 9.3e-42 rpiB; ribose 5-phosphate isomerase B K01808; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.815
rpiB-2
Ribose-5-phosphate isomerase B; KEGG: cno:NT01CX_0543 5.7e-42 rpiB; ribose 5-phosphate isomerase B K01806; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.815
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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