STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74347.1KEGG: hma:rrnAC0265 3.3e-21 apl; AP-endonuclease/AP-lyase K01151:K01741; Psort location: Cytoplasmic, score: 8.96. (333 aa)    
Predicted Functional Partners:
EFB74348.1
Oxidoreductase, NAD-binding domain protein; KEGG: ret:RHE_CH03642 3.7e-86 probable oxidoreductase protein K00100; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.976
EFB74346.1
KEGG: dge:Dgeo_2692 8.1e-43 xylose isomerase K01805; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.950
EFB74344.1
Kinase, PfkB family; KEGG: rha:RHA1_ro02785 6.7e-15 carbohydrate kinase K00924.
 
 
 0.867
EFB76676.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vch:VC1822 3.7e-20 PTS system, fructose-specific IIABC component K02768:K02769:K02770.
  
 
 0.820
EFB75593.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: cpf:CPF_0564 1.1e-123 fruA; PTS system, fructose-specific, IIABC component K02768:K02769; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.820
EFB74345.1
KEGG: sdy:SDY_4132 8.8e-53 putative aldolase K01624.
 
  
 0.758
EFB77512.1
Oxidoreductase, NAD-binding domain protein; KEGG: hsa:27294 1.1e-45 DHDH; dihydrodiol dehydrogenase (dimeric) K00212; Psort location: Periplasmic, score: 9.44.
 
 
 0.752
EFB75509.1
Oxidoreductase, NAD-binding domain protein; KEGG: lpl:lp_2604 3.7e-47 oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.727
EFB74489.1
KEGG: efa:EF1731 2.2e-24 aroD; 3-dehydroquinate dehydratase, type I K03785; Psort location: Cytoplasmic, score: 8.96.
    
 0.641
EFB76857.1
AP endonuclease, family 2; Psort location: Cytoplasmic, score: 8.96.
 
    0.633
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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