STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB74268.1DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.96. (95 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
  0.795
EFB74267.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB74269.1
Resolvase, N-terminal domain protein.
       0.545
EFB74270.1
DNA-binding helix-turn-helix protein; KEGG: sco:SCO5998 0.0013 murA2, SCBAC1C11.01c, StBAC16H6.33c; putative UDP-N-acetylglucosamine transferase K00790; Psort location: Cytoplasmic, score: 8.96.
       0.545
EFB76737.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.541
EFB76494.1
Hypothetical protein.
  
     0.451
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.