STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ97310.1RecA protein; KEGG: geo:Geob_1115 1.3e-28 recA; recombinase A K03553; Psort location: Cytoplasmic, score: 9.97. (400 aa)    
Predicted Functional Partners:
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
 0.974
ERJ88640.1
Putative repressor LexA; KEGG: lde:LDBND_0101 9.0e-25 peptidase s24-like protein; K01356 repressor LexA; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.971
ERJ95014.1
KEGG: tpi:TREPR_1620 1.3e-160 recQ; ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 9.97.
  
 0.940
ERJ96023.1
KEGG: ral:Rumal_0002 9.8e-83 DNA polymerase III subunit beta K02338; Psort location: Cytoplasmic, score: 9.97.
   
 0.910
ERJ97225.1
UvrD/REP helicase; KEGG: lga:LGAS_1516 1.2e-45 superfamily I DNA/RNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.67.
 
 
 0.887
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
 0.879
ERJ94908.1
UvrD/REP helicase; KEGG: bpb:bpr_I0764 8.0e-120 UvrD/REP helicase K03657; Psort location: Cytoplasmic, score: 9.95.
 
 
 0.872
ERJ96679.1
UvrD/REP helicase; KEGG: ral:Rumal_1640 2.9e-209 UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.857
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
 
 0.821
ERJ97306.1
KEGG: cex:CSE_03910 1.7e-06 holB; putative DNA polymerase III delta' subunit K02341.
  
 0.811
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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